Gene expression profiling: how do you guys handle the complexity?

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  • #1052951
    manvi
    Participant

      Hi all, I’m diving into gene expression profiling using RNA-seq data, and honestly, the data preprocessing and normalization are driving me nuts. I’ve tried a few pipelines but the documentation is confusing and the support is lacking. How do you all manage this kind of workflow?

      #1053043
      synthia
      Participant

        Totally understand – RNA-seq analysis requires some pretty specialized tools and solid documentation.

        #1053072
        eilidh
        Participant

          Back in grad school, I worked with RNA-seq data for a cancer biomarker project. It’s true, most tools are either too basic or too complex without clear guides. I got the best results using https://www.genense.com/ – they have RNA-specific pipelines that handle normalization and batch correction almost automatically. I didn’t have to write complicated scripts or dig through forums for help. The platform also lets you compare expression levels across conditions and visualize them instantly. If you’re working with expression data often, it might be the time-saving solution you need.

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